Transform Raw T1 MRI to Talairach-AC/PC-Anatomist

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

Anatomy Normalization (using AimsMIRegister)
Change Template Referential
Cingular Pole Projection
Compute Cortical Fold Graph Upgrade From Old
Cortical Fold Graph (3.1+)
Cortical Fold Graph (general)
Cortical Fold Graph (one hemisphere)
Cortical Fold Graph 2007-2011 (general)
Cortical Fold Graph Upgrade Structure
Extract clusters
Graph Structure (3.1)
Graph To Talairach converter
Hemisphere Cortical Folds Graph
Import FreeSurfer grey/white segmentation to Morphologist
Import MNI CIVET Segmentation
Localize Talairach Coordinate
Segmentation of Corpus Callosum
Simplified Morphologist 2015
Skull-stripped brain normalization
Talairach transformation from manual AC/PC
Talairach Transformation From Normalization

Associated formats

Matlab file
Transformation matrix

Associated ontology rules

  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/registration/RawT1-<subject>_<acquisition>_TO_Talairach-ACPC
  • brainvisa-3.0 :
    • {protocol}/{subject}/registration/RawT1-<subject>_TO_Talairach-ACPC
    {protocol}/{subject}/registration/RawT1-<subject>_{acquisition}_TO_Talairach-ACPC
  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/registration/RawT1-<subject>_<acquisition>_TO_Talairach-ACPC

    Key attributes

  • brainvisa-3.2.0 :
    • rescan ,  acquisition_date ,  time_point ,  time_duration ,  center ,  subject ,  acquisition
  • brainvisa-3.0 :
    • protocol ,  subject ,  acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition